Publications scientifiques

2019

Chabas H, Nicot A, Meaden S, Westra E, Pradier L, Lion S, Moineau S, Gandon S. 2018. Variability in the durability of CRISPR–Cas immunity. Phil. Trans. B. https://doi.org/10.1098/rstb.2018.0097

Chaïb A, Philippe C, Jaomanjaka F, Claisse O, Jourdes M, Lucas P, Cluzet S, Le Marrec C. (2019). Lysogeny in the lactic acid bacterium Oenococcus oeni is responsible for modified colony morphology on red grape juice agar. Appl Environ Microbiol.  https://doi.org/10.1128/AEM.00997-19

d’Humières C, Touchon M, Dion S, Cury J, Ghozlane A, Garcia-Garcera M, Bouchier C, Ma L, Denamur E, Rocha EPC. (2019) A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach. Scientific reports. 9:1-13. https://doi.org/10.1038/s41598-019-47656-w

De Sordi L, Lourenço M, Debarbieux L. “I will survive”: A tale of bacteriophage-bacteria coevolution in the gut. Gut Microbes. 2019;10(1):92-99. https://doi.org/10.1080/19490976.2018.1474322.

De Sordi L, Lourenço M, Debarbieux L. The battle within: interactions of bacteriophages and bacteria in the gastrointestinal tract. Cell Host Microbe. 2019 Feb 13;25(2):210-218. https://doi.org/10.1016/j.chom.2019.01.018.

Dufour N, Delattre R, Chevallereau A, Ricard JD, Debarbieux L. Phage therapy of pneumonia is not associated with an over stimulation of the inflammatory response compared to antibiotic treatment in mice. Antimicrob Agents Chemother. 2019 Jul 25;63(8). pii: e00379-19. https://doi.org/10.1128/AAC.00379-19.

Dugat-Bony E, Lossouarn J, De Paepe M, Sarthou AS, Fedala Y, Petit MA, Chaillou S. Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles.Food Microbiol. 2020 Feb;85:103278. https://doi.org/10.1016/j.fm.2019.103278.

Fillol-Salom A*, Alsaadi A*, Sousa JAM*, Zhong L, Foster K, Rocha EPC, Penadés JR, Ingmer H, Haaber J. (2019) Bacteriophages benefit from generalized transduction PLoS Pathogens. 15:e1007888. https://doi.org/10.1371/journal.ppat.1007888

Froissart, Rémy, Charlotte Brives, Cécile Breyton, & Claire Le Marrec. « “French Phage Network” Annual Conference 2018—Fourth Meeting Report ». Viruses 11, nᵒ 5 (mai 2019): 470‑80. https://doi.org/10.3390/v11050470.

Huet Alexis, Robert L. Duda, Pascale Boulanger, and James F. Conway. Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy. PNAS first published October 2, 2019. https://doi.org/10.1073/pnas.1909645116

Jacquet, S. et C. Depecker. 2019. Les virus, piliers de la vie marine. Pour la Science n° 104 (aout-sept 2019), pp 36-43.

Lossouarn, J.; Briet, A.; Moncaut, E.; Furlan, S.; Bouteau, A.; Son, O.; Leroy, M.; DuBow, M.S.; Lecointe, F.; Serror, P.; Petit, M.-A. Enterococcus faecalis Countermeasures Defeat a Virulent Picovirinae Bacteriophage. Viruses 2019, 11, 48. https://doi.org/10.3390/v11010048

Lourenço M, De Sordi L, Debarbieux L. The Diversity of Bacterial Lifestyles Hampers Bacteriophage Tenacity. Viruses. 2018 Jun 15;10(6). pii: E327. https://doi.org/10.3390/v10060327

Nair RR.*, Vasse M.*, Wielgoss S., Sun L., Nicco Yu YT., Velicer GJ. 2019 Bacterial predator-prey coevolution accelerates genome evolution and selects on virulence-associated prey defences. Nature Communications 10:4301 https://doi.org/10.1038/s41467-019-12140

Sousa JAM, Rocha EPC (2019) Dynamics of phage predation and lysogeny are shaped by environmental structure: implications for antimicrobial therapies and the emergence of resistance.  Scientific Reports 9:3149. https://doi.org/10.1038/s41598-019-39773

Thiry D, Passet V, Danis-Wlodarczyk K, Lood C, Wagemans J, De Sordi L, van Noort V, Dufour N, Debarbieux L, Mainil JG, Brisse S, Lavigne R. Viruses 2019 May 3; 11(5) pii: E411. https://doi.org/10.3390/v11050411

Trotereau A, Schouler C. Use of a chicken embryo lethality assay to assess the efficacy of phage therapy. Methods Mol Biol. 2019;1898:199-205. https://doi.org/10.1007/978-1-4939-8940-9_17.

Wahl A, Battesti A, Ansaldi M. 2019 Prophages in Salmonella enterica: a driving force in reshaping the genome and physiology of their bacterial host? Mol Microbiol. 111(2):303-316. doi: 10.1111/mmi.14167

Weiss V. U. , R. Pogan, S. Zoratto, K. M. Bond, P. Boulanger, M. F. Jarrold, N. Lyktey, D. Pahl, N. Puffler, M. Schelhaas, E. Selivanovitch, C. Uetrecht, et G. Allmaier, « Virus-like particle size and molecular weight/mass determination applying gas-phase electrophoresis (native nES GEMMA) », Analytical and Bioanalytical Chemistry, vol. 411, nᵒ 23, p. 5951-5962, sept. 2019. https://doi.org/10.1007/s00216-019-01998-6

Wielgoss S, Wolfensberger R, Sun L, Fiegna F, Velicer GJ. 2019. Social genes are selection hotspots in kin groups of a soil microbe. Science, 363 (6433): 1342-1345. https://doi.org/10.1126/science.aar4416

2018

Ansaldi, Mireille, Laurent Debarbieux, Sylvain Gandon, Marie-Agnès Petit, Paulo Tavares, & Pascale Boulanger. « “French Phage Network”—Third Meeting Report ». Viruses 10, nᵒ 3 (mars 2018): 123. https://doi.org/10.3390/v10030123.

Chabas H, Lion S, Meaden S, Moineau S, Nicot A, van Houte S, Wahl L, Westra E, S Gandon . 2018. Evolutionary emergence of infectious diseases in heterogeneous host populations. Plos Biology. https://doi.org/10.1371/journal.pbio.2006738

Cornuault, J., Petit, M.A., Mariadassou, M., Benevides, L., Moncaut, E., Langella, P., Sokol, H., De Paepe, M. (2018) Phages infecting Faecalibacterium prausnitzii belong to novel viral genera that help decipher intestinal viromes. Microbiome, Apr 3;6(1):65. https://doi.org/10.1186/s40168-018-0452-1.

De Jode M, Roach D, Debarbieux L. [Immunophage synergy is required for successful pulmonary phage therapy]. Med Sci (Paris). 2018 Apr;34(4):291-293. https://doi.org/10.1051/medsci/20183404004. Epub 2018 Apr 16. French. PubMed PMID: 29658466.

Debarbieux L, Forterre P, Krupovic M, Kutateladze M, Prangishvili D. Centennial Celebration of the Bacteriophage Research. Res Microbiol. 2018 Oct 31. pii: S0923-2508(18)30143-8. https://doi.org/10.1016/j.resmic.2018.10.001. PubMed PMID: 30391303.

Dominguez-Medina S, Fostner S, Defoort M, Stark AK, Abdul Halim M, Vernhes E, Gely M, Jourdan T, Alava T, Boulanger P, Masselon M, Hentz S. Neutral mass spectrometry of virus capsids above 100 megadaltons with nanomechanical resonators. Science  23 Nov 2018: Vol. 362, pp. 918-922 https://doi.org/10.1126/science.aat6457

Dufour N, Delattre R, Debarbieux L. In Vivo Bacteriophage Biodistribution. Methods Mol Biol. 2018;1693:123-137. https://doi.org/10.1007/978-1-4939-7395-8_11. PubMed PMID: 29119437.

Forti F, Roach DR, Cafora M, Pasini ME, Horner DS, Fiscarelli EV, Rossitto M, Cariani L, Briani F, Debarbieux L, Ghisotti D. Design of a Broad-Range Bacteriophage Cocktail That Reduces Pseudomonas aeruginosa Biofilms and Treats Acute Infections in Two Animal Models. Antimicrob Agents Chemother. 2018 May 25;62(6). pii: e02573-17. https://doi.org/10.1128/AAC.02573-17. Print 2018 Jun. PubMed PMID: 29555626.

Geoffrey Hutinet, Arthur Besle, Olivier Son, Stephen McGovern, Raphaël Guerois, Marie-Agnès Petit, Françoise Ochsenbein and François Lecointe (2018) Sak4 of Phage HK620 Is a RecA Remote Homolog With Single-Strand Annealing Activity Stimulated by Its Cognate SSB Protein. Front. Microbiol., 24 April 2018 | https://doi.org/10.3389/fmicb.2018.00743

Jacquet S, X Zhong, P Peduzzi, FT Thingstad, KJ Parikka, M Weinbauer. 2018. Virus interactions in the aquatic world. In Viruses of microbes edited by Stephen Abedon and Paul Hyman, Horizon Press https://doi.org/10.21775/9781910190852.06

Jacquet S, X Zhong, P Peduzzi, FT Thingstad, KJ Parikka, M Weinbauer. 2018. Methods and technologies to assess viral interactions in the aquatic world. In Viruses of microbes edited by Stephen Abedon and Paul Hyman, Horizon Press https://doi.org/10.21775/9781910190852.15

Landsberger, Mariann, Sylvain Gandon, Sean Meaden, Clare Rollie, Anne Chevallereau, Hélène Chabas, Angus Buckling, Edze R. Westra, & Stineke van Houte. « Anti-CRISPR Phages Cooperate to Overcome CRISPR-Cas Immunity ». Cell 174, nᵒ 4 (9 août 2018): 908-916.e12. https://doi.org/10.1016/j.cell.2018.05.058.

Parikka KJ, S Jacquet, J Colombet and M Le Romancer. 2018. Abundance and observations of thermophilic microbial and viral communities in submarine and terrestrial hot fluid systems of the French Southern and Antarctic Lands. Polar Biology 41:1335–1352

Philippe, C., Krupovic, M., Jaomanjaka, F., Claisse, O., Pétrel, M., and Le Marrec, C.* (2018). Bacteriophage GC1, a novel tectivirus infecting Gluconobacter cerinus, an acetic acid bacterium associated with wine-making. Viruses 10(1). pii: E39. https://doi.org/10.3390/v10010039.

Rohde C, Resch G, Pirnay JP, Blasdel BG, Debarbieux L, Gelman D, Górski A, Hazan R, Huys I, Kakabadze E, Łobocka M, Maestri A, Almeida GMF, Makalatia K, Malik DJ, Mašlaňová I, Merabishvili M, Pantucek R, Rose T, Štveráková D, Van Raemdonck H, Verbeken G, Chanishvili N. Expert Opinion on Three Phage Therapy Related Topics: Bacterial Phage Resistance, Phage Training and Prophages in Bacterial Production Strains. Viruses. 2018 Apr 5;10(4). pii: E178. https://doi.org/10.3390/v10040178. PubMed PMID: 29621199

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB,  Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA. (2018) Minimum Information about an Uncultivated Virus Genome (MIUViG). Nat Biotechnol.17. https://doi.org/10.1038/nbt.4306.

Schiettekatte, O., Vincent, A.T., Malosse, C., Lechat, P., Chamot-Rooke, J., Veyrier, F.J., Picardeau, M., Bourhy, P., 2018. Characterization of LE3 and LE4, the only lytic phages known to infect the spirochete Leptospira. Sci. Rep. 8, 11781. https://doi.org/10.1038/s41598-018-29983-6

Torres-Barceló C. 2018. Phage Therapy Faces Evolutionary Challenges. Viruses. 10(6), 323. https://doi.org/10.3390/v10060323

Torres-Barceló C. 2018. The disparate effects of bacteriophages on antibiotic-resistant bacteria. Emerging Microbes and Infections. 7(1):168. https://doi.org/10.1038/s41426-018-0169-z

Torres-Barceló C., Gurney J., Gougat-Barberá C., Vasse M., Hochberg M. E. 2018. Transient negative effects of antibiotics on phages do not jeopardise the advantages of combination therapies. FEMS Microbiology Ecology, fiy107. https://doi.org/10.1093/femsec/fiy107

van de Water JAJM, L Courtial,  F Houlbrèque, S Jacquet, C Ferrier-Pagès. 2018. Ultra-violet radiation has a limited impact on seasonal differences in the Acropora muricata holobiont. Frontiers in Marine Science https://doi.org/10.3389/fmars.2018.00275

Vasse M. and Wielgoss S. 2018. Bacteriophages of Myxococcus xanthus, a social bacterium. Viruses. 10 (7), 374. https://doi.org/10.3390/v10070374

Zhong X, C Suttle, AC Baudoux, E Derelle, J Colombet, J Caleta, A Cho, C Six and S Jacquet. 2018. A new freshwater cyanophage harbouring integrase. Frontiers in Microbiology https://doi.org/10.3389/fmicb.2018.02204

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